DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Table 7 Column scores on BALIBASE 3

Method (Protein)	RV11	RV12	RV20	RV30	RV40	RV50	Total
DIALIGN-TX 1.0	26.53	75.23	30.49	38.53	44.82	46.56	44.34
DIALIGN-T 0.2.2	25.32⁰	72.55⁰	29.20⁰	34.90^-	45.23⁰	44.25⁰	42.76^-
DIALIGN 2.2	26.50⁰	69.55^-	29.22⁰	31.23^-	44.12⁰	42.50^-	41.49^--
CLUSTAL W2	22.74⁰	71.59⁰	21.98⁰	27.23^-	39.55⁰	30.75^-	37.35^--
T-COFFEE 5.56	31.34⁰	81.18⁺⁺	37.81⁺	36.57⁰	48.20⁰	50.63⁰	48.54⁺⁺
POA V2	15.26^--	63.84^--	23.34^-	28.23^-	33.67^--	27.00^--	33.37^--
MAFFT 6.240 L-INSi	44.61 ⁺⁺	83.75⁺⁺	45.27 ⁺⁺	56.93⁺⁺	59.69 ⁺⁺	56.19⁺	58.57 ⁺⁺
MAFFT 6.240 E-INSi	43.71⁺⁺	83.43⁺⁺	44.63⁺⁺	58.80 ⁺⁺	58.33⁺⁺	58.94 ⁺⁺	58.37⁺⁺
MUSCLE 3.7	33.03⁺	80.46⁺⁺	35.22⁰	38.77⁰	45.96⁰	44.94⁰	47.58⁺⁺
PROBCONS 1.12	41.68⁺⁺	85.52 ⁺⁺	40.49⁺⁺	54.37⁺⁺	52.90⁺⁺	56.50⁺⁺	55.66⁺⁺

Average column scores (CS) of the benchmarked programs on the core blocks of BAL-IBASE 3. The symbols are analogous to Table 1.

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