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Table 7 Column scores on BALIBASE 3

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (Protein) RV11 RV12 RV20 RV30 RV40 RV50 Total
DIALIGN-TX 1.0 26.53 75.23 30.49 38.53 44.82 46.56 44.34
DIALIGN-T 0.2.2 25.320 72.550 29.200 34.90- 45.230 44.250 42.76-
DIALIGN 2.2 26.500 69.55- 29.220 31.23- 44.120 42.50- 41.49--
CLUSTAL W2 22.740 71.590 21.980 27.23- 39.550 30.75- 37.35--
T-COFFEE 5.56 31.340 81.18++ 37.81+ 36.570 48.200 50.630 48.54++
POA V2 15.26-- 63.84-- 23.34- 28.23- 33.67-- 27.00-- 33.37--
MAFFT 6.240 L-INSi 44.61 ++ 83.75++ 45.27 ++ 56.93++ 59.69 ++ 56.19+ 58.57 ++
MAFFT 6.240 E-INSi 43.71++ 83.43++ 44.63++ 58.80 ++ 58.33++ 58.94 ++ 58.37++
MUSCLE 3.7 33.03+ 80.46++ 35.220 38.770 45.960 44.940 47.58++
PROBCONS 1.12 41.68++ 85.52 ++ 40.49++ 54.37++ 52.90++ 56.50++ 55.66++
  1. Average column scores (CS) of the benchmarked programs on the core blocks of BAL-IBASE 3. The symbols are analogous to Table 1.