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Table 8 Sum-of-pairs scores on BRAliBase II

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (DNA) G2In rRNA SRP tRNA U5 Total
DIALIGN-TX 1.0 72.08 91.69 82.92 78.53 77.80 80.42
DIALIGN-T 0.2.2 54.68-- 69.13-- 60.81-- 64.44-- 67.87-- 63.53--
DIALIGN 2.2 71.720 89.89-- 81.47-- 78.570 76.16-- 79.37--
CLUSTAL W2 72.680 93.25+ 87.40++ 86.96++ 79.56+ 83.80++
T-COFFEE 5.56 73.790 90.94+ 83.900 81.650 79.13+ 81.73+
POA V2 67.22-- 88.92-- 85.47++ 76.91- 77.280 79.02--
MAFFT 6.240 L-INSi 78.93++ 93.85+ 87.46++ 91.79++ 82.80++ 86.84++
MAFFT 6.240 E-INSi 77.39++ 93.80+ 87.24++ 90.60++ 80.46++ 85.71++
MUSCLE 3.7 76.42++ 94.04+ 87.06++ 87.27++ 79.71+ 84.69++
PROBCONSRNA 1.10 80.08 ++ 94.48 ++ 88.07 ++ 92.58 ++ 84.76 ++ 87.90 ++
  1. Average sum-of-pair scores (SPS) of the benchmarked programs on BRAliBase II. The The symbols are analogous to Table 1.