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Table 9 Column scores on BRAliBase II

From: DIALIGN-TX: greedy and progressive approaches for segment-based multiple sequence alignment

Method (DNA) G2In rRNA SRP tRNA U5 Total
DIALIGN-TX 1.0 60.85 84.33 70.95 68.05 62.71 69.03
DIALIGN-T 0.2.2 36.51-- 50.00-- 42.34-- 52.01-- 50.34-- 46.43--
DIALIGN 2.2 60.900 81.08-- 68.53-- 67.590 60.11- 67.29--
CLUSTAL W2 61.240 86.720 76.61++ 76.20++ 65.11+ 72.85++
T-COFFEE 5.56 60.240 82.56- 71.630 69.230 62.930 69.010
POA V2 55.21-- 80.38-- 73.77++ 66.030 61.630 67.12--
MAFFT 6.240 L-INSi 65.23+ 87.49+ 76.75++ 84.59++ 68.46++ 76.25++
MAFFT 6.240 E-INSi 63.84+ 87.34+ 76.59++ 83.29++ 65.71++ 75.04++
MUSCLE 3.7 63.200 87.97+ 76.57++ 78.01++ 64.34+ 73.64++
PROBCONSRNA 1.10 68.70 ++ 88.60 ++ 77.55 ++ 85.46 ++ 71.73 ++ 78.19 ++
  1. Average column scores (CS) of the benchmarked programs on BRAliBase II. The symbols are analogous to Table 1.