Table 1 Randomized sites (at qcutoff = 0.8) in the 13 different individual protein-coding genes within the 31 currently available complete mitochondrial genomes of squamata. sngl: number of singleton positions, %rnd: percentage of randomized variable sites.
From: Noisy: Identification of problematic columns in multiple sequence alignments
Gene | length | sngl | q ≥ 0.8 | %rnd |
|---|---|---|---|---|
atp6 | 684 | 42 | 405 | 34.65 |
atp8 | 171 | 7 | 108 | 32.75 |
cox1 | 1536 | 88 | 1008 | 28.65 |
cox2 | 672 | 34 | 443 | 29.02 |
cox3 | 786 | 45 | 516 | 28.63 |
cytb | 1131 | 74 | 676 | 33.69 |
nd1 | 942 | 44 | 589 | 32.80 |
nd2 | 1032 | 63 | 626 | 33.24 |
nd3 | 345 | 11 | 222 | 32.46 |
nd4 | 1371 | 65 | 831 | 34.65 |
nd4l | 288 | 16 | 183 | 30.90 |
nd5 | 1803 | 103 | 1040 | 36.61 |
nd6 | 540 | 25 | 373 | 26.30 |