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Table 5 Average number of genes common to each pair of methods for Datasets 3–38

From: A weighted average difference method for detecting differentially expressed genes from microarray data

(a) MAS AD FC RP modT samT shrinkT ibmT
WAD 52.0 39.1 49.7 37.7 45.2 39.8 42.8
AD   61.9 84.1 34.4 47.1 37.2 33.2
FC    58.2 29.5 39.1 31.2 28.1
RP     30.5 41.8 32.4 29.8
modT      79.9 92.7 78.1
samT       83.5 65.0
shrinkT        74.8
(b) RMA AD FC RP modT samT shrinkT ibmT
WAD 62.2 50.4 60.2 31.7 32.6 30.8 33.4
AD   78.8 84.7 35.2 36.2 33.9 38.0
FC    72.3 32.2 32.8 30.8 34.5
RP     36.8 37.6 35.4 39.4
modT      88.3 93.0 88.4
samT       87.6 83.6
shrinkT        85.1
(c) DFW AD FC RP modT samT shrinkT ibmT
WAD 84.3 83.9 72.1 13.6 13.4 14.6 13.9
AD   98.6 77.3 13.7 13.5 14.7 14.0
FC    77.0 13.6 13.4 14.6 13.9
RP     18.1 17.9 20.1 18.8
modT      94.1 83.2 93.4
samT       81.1 91.0
shrinkT        83.0
  1. The averages were calculated from top 100 genes. Due to the symmetric nature of the matrix only the upper triangular part is presented.