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Table 3 Minimal sufficient statistics for the neanderthal, human and chimpanzee data

From: Auto-validating von Neumann rejection sampling from small phylogenetic tree spaces

Site

: 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1

Pattern

: 1 2 3 4 5 6 7 8 9 0 1 2 3 4 5

. . . . . . . . . . . . . . . . . . . . .

neanderthal

: a t c g a t c g t t g a c a a

human

: a t c g a t c g t c a g t a g

chimpanzee

: a t c g g c t a a t a a c t g

. . . . . . . . . . . . . . . . . . . . .

site

: 6 6 6 4 1 1 1 1 2 2 1 1 1 1 1

pattern

: 8 0 0 5 5 4 4 0

counts

: 5 5 3 0

  1. Site patterns and their counts from a multiple sequence alignment of the whole mitochondrial genome shotgun sequence (gi|115069275) of a neanderthal fossil Vi-80, from Vindija cave, Croatia [33], and its homologous sequence in a human (gi|13273200) and a chimpanzee (gi|1262390). The first column, (01.aaa.685)T, expresses that there are 685 sites with nucleotide a in all three species,..., and the fif-teenth column, (15.agg.1)T, expresses that there is 1 site with nucleotide g in human and chimpanzee and nucleotide a in neanderthal.
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Algorithms for Molecular Biology

ISSN: 1748-7188