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Table 1 Overview over organisms and number of CEL-files analyzed

From: Linear model for fast background subtraction in oligonucleotide microarrays

Organism

GEO #

Chiptype (dimension)

# files

min

A. Thaliana

GSE4847

ATH1-121501 (712 × 712)

18

0.0259

 

GSE7642

ATH1-121501 (712 × 712)

12

0.0544

 

GSE9311

ATH1-121501 (712 × 712)

8

0.0546

C. Elegans

GSE6547

Celegans (712 × 712)

25

0.0361

 

GSE8159

Celegans (712 × 712)

7

0.0396

D. Melanogaster

GSE3990

Drosophila_2 (732 × 732)

6

0.0620

 

GSE6558

DrosGenome1 (640 × 640)

24

0.0605

D. Rerio

GSE4859

Zebrafish (712 × 712)

8

0.0357

E. Coli

GSE11779

E_coli_2 (478 × 478)

3

0.0869

 

GSE2928

Ecoli (544 × 544)

12

0.0172

 

GSE6195

E_coli_2 (478 × 478)

4

0.0664

H. Sapiens

GSE10433

HG-U133A_2 (732 × 732)

12

0.0757

 

GSE5054

HG-U133A (712 × 712)

20

0.0392

  

HG-U133A_2 (732 × 732)

  

M. Musculus

GSE7148

HG-U133A (712 × 712)

14

0.0296

 

GSE8514

HG-U133_Plus_2 (1164 × 1164)

15

0.0738

 

GSE11897

MOE430A (712 × 712)

11

0.0640

  

MOE430B (712 × 712)

  
  

Mouse430_2 (1002 × 1002)

  
 

GSE6210

Mouse430_2

12

0.0594

 

GSE6297

Mouse430_2

24

0.0325

O. Sativa

GSE15071

Rice (1164 × 1164)

20

0.1157

R. Norvegicus

GSE4494

RG_U34A (534 × 534)

59

0.0488

 

GSE7493

Rat230_2 (834 × 834)

9

0.0497

 

GSE8238

Rat230_2 (834 × 834)

4

0.0640

S. Aureus

GSE7944

S_aureus (602 × 602)

6

0.0746

S. Cerevisiae

GSE6073

YG_S98 (534 × 534)

12

0.0283

 

GSE8379

YG_S98 (534 × 534)

8

0.0180

X. Laevis

GSE3368

Xenopus_laevis (712 × 712)

20

0.0514