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Table 1 Overview over organisms and number of CEL-files analyzed

From: Linear model for fast background subtraction in oligonucleotide microarrays

Organism GEO # Chiptype (dimension) # files min
A. Thaliana GSE4847 ATH1-121501 (712 × 712) 18 0.0259
  GSE7642 ATH1-121501 (712 × 712) 12 0.0544
  GSE9311 ATH1-121501 (712 × 712) 8 0.0546
C. Elegans GSE6547 Celegans (712 × 712) 25 0.0361
  GSE8159 Celegans (712 × 712) 7 0.0396
D. Melanogaster GSE3990 Drosophila_2 (732 × 732) 6 0.0620
  GSE6558 DrosGenome1 (640 × 640) 24 0.0605
D. Rerio GSE4859 Zebrafish (712 × 712) 8 0.0357
E. Coli GSE11779 E_coli_2 (478 × 478) 3 0.0869
  GSE2928 Ecoli (544 × 544) 12 0.0172
  GSE6195 E_coli_2 (478 × 478) 4 0.0664
H. Sapiens GSE10433 HG-U133A_2 (732 × 732) 12 0.0757
  GSE5054 HG-U133A (712 × 712) 20 0.0392
   HG-U133A_2 (732 × 732)   
M. Musculus GSE7148 HG-U133A (712 × 712) 14 0.0296
  GSE8514 HG-U133_Plus_2 (1164 × 1164) 15 0.0738
  GSE11897 MOE430A (712 × 712) 11 0.0640
   MOE430B (712 × 712)   
   Mouse430_2 (1002 × 1002)   
  GSE6210 Mouse430_2 12 0.0594
  GSE6297 Mouse430_2 24 0.0325
O. Sativa GSE15071 Rice (1164 × 1164) 20 0.1157
R. Norvegicus GSE4494 RG_U34A (534 × 534) 59 0.0488
  GSE7493 Rat230_2 (834 × 834) 9 0.0497
  GSE8238 Rat230_2 (834 × 834) 4 0.0640
S. Aureus GSE7944 S_aureus (602 × 602) 6 0.0746
S. Cerevisiae GSE6073 YG_S98 (534 × 534) 12 0.0283
  GSE8379 YG_S98 (534 × 534) 8 0.0180
X. Laevis GSE3368 Xenopus_laevis (712 × 712) 20 0.0514