Table 1 Summary of the four programmes for comparison
From: CHSMiner: a GUI tool to identify chromosomal homologous segments
Programme | CHS definition | Search algorithm | Statistical evaluation |
|---|---|---|---|
CHSMiner | Gene content | Bottom-up | Analytical calculation |
LineUp | Gene colinearity | Bottom-up | Monte Carlo simulation |
CloseUp | Gene content | Bottom-up | Monte Carlo simulation |
HomologyTeams | Gene content | Top-down | Not available |