Table 2 FINE/GOOD/EXCELLENT comparison on Human Chromosome 22
From: Lossless filter for multiple repeats with bounded edit distance
q | p | selectiveness FINE/GOOD/EXCEL | running time FINE/GOOD/EXCEL | GOOD/FINE | EXCEL./GOOD | excel./FINE | |||
|---|---|---|---|---|---|---|---|---|---|
SU | SI | SD | SI | SD | SI | ||||
6.92% | 501.28 | ||||||||
14 | 65 | 1.63% | 375.59 | 1.335 | 4.253 | 3.198 | 1.056 | 2.396 | 4.490 |
1.54% | 1201.00+ | ||||||||
6.71% | 598.08 | ||||||||
13 | 79 | 0.88% | 451.20 | 1.326 | 7.637 | 1.795 | 1.062 | 1.354 | 8.114 |
0.83% | 810.02 | ||||||||
6.93% | 761.29 | ||||||||
12 | 93 | 0.51% | 596.23 | 1.277 | 13.653 | 1.289 | 1.075 | 1.009 | 14.684 |
0.47% | 768.50 | ||||||||
7.24% | 1067.52 | ||||||||
11 | 107 | 0.27% | 862.29 | 1.238 | 26.321 | 1.099 | 1.136 | 0.887 | 33.684 |
0.24% | 947.25 | ||||||||
7.88% | 1647.85 | ||||||||
10 | 121 | 0.14% | 1417.72 | 1.162 | 57.805 | 1.027 | 1.093 | 0.883 | 71.543 |
0.12% | 1455.64 | ||||||||
8.47% | 3047.66 | ||||||||
9 | 135 | 0.07% | 2769.05 | 1.101 | 120.000 | 1.002 | 1.124 | 0.910 | 148.254 |
0.06% | 2773.61 | ||||||||
mean | 2.83% | 1225.10 | 1.240 | 38.278 | 1.568 | 1.091 | 1.240 | 42.550 | |