From: An image processing approach to computing distances between RNA secondary structures dot plots
Index | Structure in dot-brackets notation | Length (nt.) | Output sequence of original RNAinverse [6] | Output sequence of modified RNAinverse [6] |
---|---|---|---|---|
1 | (((...(((...(((...)))...(((...)))...)))...))) | 45 | ACCGCCAGACAGGGCCAAGCCA- | UCCAAAUUCAUAGUAUAAUACA- |
CAUCCUAAGGAAAAGAAAAAGGA | CAUCCUAAGGAAAAGAAAAAGGA | |||
2 | (((.((.(((..((((((((.......)))))))))))...)).))) | 47 | GCUGUAGCCAAGUGGUAGUUGCU- | GCGUUCCGUCAGACUCAUGAGGC- |
AUAAAAUUAUUAUGGAUGUAGGGU | UAGGUCAUGGGUGACUCAGACCGC | |||
3 | (((((..((....((((.....)))).....))...))))) | 41 | GUCUGAAGCUCAAUGAUCUC- | CUAGACCUCUUUAGUGGAAC- |
CAAUUAAACUCGUGUACGGAU | GGCCGCGGACUGAAUAUCUAG | |||
4 | .((((((((((((...((.......))...))))))))).))) | 43 | CUCGUGAAUAUAACACUCAAG- | AUUCAAAAAAAACAAAUCAAA- |
GACCGAAAUUUAUGUUUAGUGA | AAAAGAAAAGUUUUUUUUAGAA | |||
5 | ((((..(((...((...(((((....)))))...))...))))))) | 46 | GGUUCAGUUCAUUGCUCAUACUU- | UAUGUUAUCAAUUGUUGGCAUGC- |
AACGGUAUUCUCGUACGACAACC | AGUCAUGCAUUCAUAGGGUCGUG |