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Table 2 Average AUC values for Datasets 3–26 and 27–38

From: Ranking differentially expressed genes from Affymetrix gene expression data: methods with reproducibility, sensitivity, and specificity

Method PLIER VSN FARMS mmgMOS MBEI GCRMA MAS RMA DFW Average
Datasets 3–26
WAD 89.15 90.97 91.58 94.84 88.19 92.67 96.74 91.37 91.41 91.88
AD 87.32 92.96 92.47 93.13 89.14 93.42 93.76 93.10 92.24 91.95
FC 86.20 92.92 92.49 92.82 89.71 93.16 93.63 93.12 92.24 91.81
RP 92.01 92.48 93.06 92.20 90.07 93.23 91.51 92.54 92.53 92.18
modT 85.43 90.70 89.23 91.91 86.79 91.19 95.67 91.38 90.11 90.27
samT 85.25 90.94 89.40 92.99 87.09 91.07 95.95 91.23 89.96 90.43
shrinkT 84.65 90.62 - 92.56 86.89 92.12 95.73 91.32 91.45 90.67
ibmT 86.27 91.02 90.04 93.11 87.10 91.06 96.34 91.77 90.25 90.78
Datasets 27–38
WAD 91.30 95.41 93.55 92.36 93.39 95.75 92.42 96.73 94.09 93.89
AD 89.01 96.22 93.81 86.99 93.11 96.18 87.41 96.77 94.22 92.64
FC 88.82 96.20 93.81 85.92 92.94 96.06 88.23 96.73 94.22 92.55
RP 91.57 96.53 94.76 86.94 93.53 96.25 84.55 96.53 94.67 92.81
modT 89.28 94.53 91.62 89.61 90.50 93.33 90.90 95.28 92.36 91.93
samT 88.53 95.08 91.90 89.14 90.49 93.60 90.31 95.70 92.05 91.87
shrinkT 88.56 94.04 - 89.85 90.13 94.48 90.97 94.85 93.68 92.07
ibmT 89.89 94.80 89.95 90.60 90.66 93.67 91.92 95.49 92.43 92.16
Average 88.33 93.46 91.98 90.94 89.98 93.58 92.25 93.99 92.37  
  1. As statistics for shrinkT frequently include infinities, AUC values for FARMS/shrinkT could not be calculated. Note that AUC values for each dataset are given in the additional file [see Additional file 1].