TY - JOUR AU - Bar-Joseph, Z. PY - 2004 DA - 2004// TI - Analyzing time series gene expression data JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth283 DO - 10.1093/bioinformatics/bth283 ID - Bar-Joseph2004 ER - TY - JOUR AU - Androulakis, I. P. AU - Yang, E. AU - Almon, R. R. PY - 2007 DA - 2007// TI - Analysis of Time-Series Gene Expression Data: Methods, Challenges and Opportunities JO - Annual Review of Biomedical Engineering VL - 9 UR - https://doi.org/10.1146/annurev.bioeng.9.060906.151904 DO - 10.1146/annurev.bioeng.9.060906.151904 ID - Androulakis2007 ER - TY - BOOK AU - McLachlan, G. J. AU - Do, K. AU - Ambroise, C. PY - 2004 DA - 2004// TI - Analysing microarray gene expression data UR - https://doi.org/10.1002/047172842X DO - 10.1002/047172842X ID - McLachlan2004 ER - TY - CHAP AU - Cheng, Y. AU - Church, G. M. PY - 2000 DA - 2000// TI - Biclustering of Expression Data BT - In Proc of the 8th International Conference on Intelligent Systems for Molecular Biology ID - Cheng2000 ER - TY - JOUR AU - Mechelen, I. V. AU - Bock, H. H. AU - Boeck, P. D. PY - 2004 DA - 2004// TI - Two-mode clustering methods: a structured overview JO - Stat Methods Med Res VL - 13 UR - https://doi.org/10.1191/0962280204sm373ra DO - 10.1191/0962280204sm373ra ID - Mechelen2004 ER - TY - JOUR AU - Madeira, S. C. AU - Oliveira, A. L. PY - 2004 DA - 2004// TI - Biclustering algorithms for biological data analysis: a survey JO - IEEE/ACM Trans Comput Biol Bioinform VL - 1 UR - https://doi.org/10.1109/TCBB.2004.2 DO - 10.1109/TCBB.2004.2 ID - Madeira2004 ER - TY - JOUR AU - Tanay, A. AU - Sharan, R. AU - Shamir, R. PY - 2002 DA - 2002// TI - Discovering statistically significant biclusters in gene expression data JO - Bioinformatics. VL - 18 UR - https://doi.org/10.1093/bioinformatics/18.suppl_1.S136 DO - 10.1093/bioinformatics/18.suppl_1.S136 ID - Tanay2002 ER - TY - JOUR AU - Ben-Dor, A. AU - Chor, B. AU - Karp, R. AU - Yakhini, Z. PY - 2002 DA - 2002// TI - Discovering Local Structure in Gene Expression Data: The Order-Preserving Submatrix Problem JO - J Comput Biol VL - 10 UR - https://doi.org/10.1089/10665270360688075 DO - 10.1089/10665270360688075 ID - Ben-Dor2002 ER - TY - CHAP AU - Madeira, S. C. AU - Teixeira, M. C. AU - Sá-Correia, I. AU - Oliveira, A. L. PY - 2008 DA - 2008// TI - Identification of Regulatory Modules in Time Series Gene Expression Data using a Linear Time Biclustering Algorithm BT - IEEE/ACM Transactions on Computational Biology and Bioinformatics, 21 Mar ID - Madeira2008 ER - TY - JOUR AU - Peeters, R. PY - 2003 DA - 2003// TI - The maximum edge biclique problem is NP-complete JO - Discrete Applied Mathematics VL - 131 UR - https://doi.org/10.1016/S0166-218X(03)00333-0 DO - 10.1016/S0166-218X(03)00333-0 ID - Peeters2003 ER - TY - JOUR AU - Yang, E. AU - Foteinou, P. T. AU - King, K. AU - Yarmush, M. L. AU - Androulakis, I. PY - 2007 DA - 2007// TI - A novel non-overlapping bi-clustering algorithm for network generation using living cell array data JO - Bioinformatics VL - 23 UR - https://doi.org/10.1093/bioinformatics/btm335 DO - 10.1093/bioinformatics/btm335 ID - Yang2007 ER - TY - CHAP AU - Murali, T. M. AU - Kasif, S. PY - 2003 DA - 2003// TI - Extracting conserved gene expression motifs from gene expression data BT - Pac Symp Biocomput ID - Murali2003 ER - TY - CHAP AU - Koyuturk, M. AU - Szpankowski, W. AU - Grama, A. PY - 2004 DA - 2004// TI - Biclustering Gene-Feature Matrices for Statistically Significant Dense Patterns BT - In Proc of the 8th International Conference on Research in Computational Molecular Biology ID - Koyuturk2004 ER - TY - CHAP AU - Liu, J. AU - Wang, W. AU - Yang, J. PY - 2004 DA - 2004// TI - Biclustering in gene expression data by tendency BT - In Proc of the 3rd International IEEE Computer Society Computational Systems Bioinformatics Conference ID - Liu2004 ER - TY - CHAP AU - Liu, J. AU - Wang, W. AU - Yang, J. PY - 2004 DA - 2004// TI - A framework for ontology-driven subspace clustering BT - In Proc of the 10th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining ID - Liu2004 ER - TY - CHAP AU - Liu, J. AU - Wang, W. AU - Yang, J. PY - 2004 DA - 2004// TI - Gene ontology friendly biclustering of expression profiles BT - In Proc of the 3rd IEEE Computational Systems Bioinformatics Conference ID - Liu2004 ER - TY - CHAP AU - Liu, J. AU - Wang, W. AU - Yang, J. PY - 2005 DA - 2005// TI - Mining Sequential Patterns from Large Data Sets BT - Kluwer ID - Liu2005 ER - TY - CHAP AU - Lonardi, S. AU - Szpankowski, W. AU - Yang, Q. PY - 2004 DA - 2004// TI - Finding Biclusters by Random Projections BT - In Proc of the 15th Annual Symposium on Combinatorial Pattern Matching UR - https://doi.org/10.1007/978-3-540-27801-6_8 DO - 10.1007/978-3-540-27801-6_8 ID - Lonardi2004 ER - TY - JOUR AU - Sheng, Q. AU - Moreau, Y. AU - Moor, B. D. PY - 2003 DA - 2003// TI - Biclustering microarray data by Gibbs sampling JO - Bioinformatics VL - 19 Suppl 2 ID - Sheng2003 ER - TY - JOUR AU - Ji, L. AU - Tan, K. PY - 2005 DA - 2005// TI - Identifying time-lagged gene clusters using gene expression data JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti026 DO - 10.1093/bioinformatics/bti026 ID - Ji2005 ER - TY - JOUR AU - Wu, C. AU - Fu, Y. AU - Murali, T. M. AU - Kasif, S. PY - 2004 DA - 2004// TI - Gene expression module discovery using Gibbs sampling JO - Genome Informatics VL - 15 ID - Wu2004 ER - TY - CHAP AU - Madeira, S. C. AU - Oliveira, A. L. PY - 2005 DA - 2005// TI - A Linear Time Biclustering Algorithm for Time Series Gene Expression Data BT - Proc of the 5th Workshop on Algorithms in Bioinformatics PB - Springer Verlag CY - LNCS/LNBI 3692 UR - https://doi.org/10.1007/11557067_4 DO - 10.1007/11557067_4 ID - Madeira2005 ER - TY - JOUR AU - Prelic, A. AU - Bleuler, S. AU - Zimmermann, P. AU - Wille, A. AU - Buhlmann, P. AU - Gruissem, W. AU - Hennig, L. AU - Thiele, L. AU - Zitzler, E. PY - 2006 DA - 2006// TI - A systematic comparison and evaluation of biclustering methods for gene expression data JO - Bioinformatics VL - 22 UR - https://doi.org/10.1093/bioinformatics/btl099 DO - 10.1093/bioinformatics/btl099 ID - Prelic2006 ER - TY - CHAP AU - Zhang, Y. AU - Zha, H. AU - Chu, C. H. PY - 2005 DA - 2005// TI - A Time-Series Biclustering Algorithm for Revealing Co-Regulated Genes BT - In Proc of the 5th IEEE International Conference on Information Technology: Coding and Computing ID - Zhang2005 ER - TY - BOOK AU - Gusfield, D. PY - 1997 DA - 1997// TI - Algorithms on strings, trees, and sequences PB - Computer Science and Computational Biology Series CY - Cambridge University Press UR - https://doi.org/10.1017/CBO9780511574931 DO - 10.1017/CBO9780511574931 ID - Gusfield1997 ER - TY - CHAP AU - Sagot, M. F. PY - 1998 DA - 1998// TI - Spelling approximate repeated or common motifs using a suffix tree BT - Proc of Latin'98 PB - Springer Verlag CY - LNCS 1380 ID - Sagot1998 ER - TY - CHAP AU - Madeira, S. C. PY - 2008 DA - 2008// TI - Efficient Biclustering Algorithms for Time Series Gene Expression Data Analysis BT - PhD thesis PB - Instituto Superior Técnico CY - Technical University of Lisbon ID - Madeira2008 ER - TY - JOUR AU - Martin, D. AU - Brun, C. AU - Remy, E. AU - Mouren, P. AU - Thieffry, D. AU - Jacq, B. PY - 2004 DA - 2004// TI - GOToolBox: functional investigation of gene datasets based on Gene Ontology JO - Genome Biology VL - 5 UR - https://doi.org/10.1186/gb-2004-5-12-r101 DO - 10.1186/gb-2004-5-12-r101 ID - Martin2004 ER - TY - JOUR AU - Teixeira, M. C. AU - Monteiro, P. AU - Jain, P. AU - Tenreiro, S. AU - Fernandes, A. R. AU - Mira, N. P. AU - Alenquer, M. AU - Freitas, A. T. AU - Oliveira, A. L. AU - Sa-Correia, I. PY - 2006 DA - 2006// TI - The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae JO - Nucleic Acids Research VL - 34 UR - https://doi.org/10.1093/nar/gkj013 DO - 10.1093/nar/gkj013 ID - Teixeira2006 ER - TY - JOUR AU - Gasch, A. P. AU - Spellman, P. T. AU - Kao, C. M. AU - Carmel-Harel, O. AU - Eisen, M. B. AU - Storz, G. AU - Botstein, D. AU - Brown, P. O. PY - 2000 DA - 2000// TI - Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes JO - Molecular Biology of the Cell VL - 11 UR - https://doi.org/10.1091/mbc.11.12.4241 DO - 10.1091/mbc.11.12.4241 ID - Gasch2000 ER - TY - JOUR AU - Ji, L. AU - Tan, K. PY - 2004 DA - 2004// TI - Mining gene expression data for positive and negative co-regulated gene clusters JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth312 DO - 10.1093/bioinformatics/bth312 ID - Ji2004 ER - TY - CHAP AU - Madeira, S. C. AU - Oliveira, A. L. PY - 2007 DA - 2007// TI - An Efficient Biclustering Algorithm for finding Genes with Similar Patterns in Time-Series Expression Data BT - Proc of the 5th Asia Pacific Bioinformatics Conference, Series in Advances in Bioinformatics and Computational Biology ID - Madeira2007 ER -