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Table 3 The median and range of the 10 × 10-fold correct classification rates (CCR) for all simulation experiments.

From: A markov classification model for metabolic pathways

   Percent Within Group Noise
Graph Model M = 2 M = 3
   0.1 0.2 0.3 0.4 0.5 0.1 0.2 0.3 0.4 0.5
Small HME3M 96.79 90.94 85.79 79.80 74.97 96.14 92.64 86.46 79.86 76.13
     CCR Range 4.15 6.99 4.49 7.42 6.73 3.36 7.69 3.98 16.83 7.36
  PLR 50.67* 50.98* 50.68* 50.35* 50.96* 50.83* 50.70* 50.58* 50.62* 50.70*
     CCR Range 1.53 1.54 2.13 1.66 1.55 1.11 1.71 1.35 1.42 0.68
  SVM (linear) 95.14* 90.48* 85.28 78.94 72.53* 94.77* 89.01* 85.16* 78.66 75.21
     CCR Range 0.72 2.31 3.16 2.61 7.02 1.61 4.39 2.72 11.55 14.54
  SVM (polynomial) 95.25* 90.05* 84.19* 79.42 75.03 94.91* 89.71* 84.82* 78.66 75.73
     CCR Range 1.52 1.18 3.74 3.15 6.92 2.33 3.67 4.38 3.09 8.41
  SVM (radial) 95.28* 89.73* 84.19* 79.39 75.07 94.37 89.48* 84.82* 78.94 75.35
     CCR Range 1.53 2.81 4.20 2.61 8.02 2.32 4.53 3.28 4.14 7.29
Medium HME3M 98.94 94.29 88.68 80.78 77.05 98.80 96.22 90.11 84.02 77.89
     CCR Range 2.92 6.18 5.73 12.51 5.56 2.40 5.59 10.57 8.98 8.76
  PLR 50.48* 50.62* 50.68* 50.48* 50.55* 50.55* 50.35* 50.62* 50.55* 50.48*
     CCR Range 2.04 0.99 1.30 2.13 1.23 0.97 0.69 1.63 1.31 1.13
  SVM (linear) 94.68* 89.80* 83.91 79.64* 76.02 94.28* 89.52* 84.80* 80.19* 73.41*
     CCR Range 2.74 22.91 3.56 4.17 4.12 1.72 2.60 5.17 2.89 5.40
  SVM (polynomial) 94.92* 90.30* 84.53* 79.32* 75.07* 94.22* 90.35* 84.53* 79.72* 75.21*
     CCR Range 2.73 21.22 4.00 5.80 2.83 1.65 3.69 6.85 2.85 4.91
  SVM (radial) 94.60* 90.30* 84.52* 79.28* 74.70* 94.19* 89.68* 84.31* 80.72* 74.80*
     CCR Range 2.45 4.35 2.82 2.99 4.56 1.90 3.49 4.67 2.93 3.59
Large HME3M 99.54 97.36 93.29 83.73 77.88 99.39 97.52 94.08 84.78 83.11
     CCR Range 2.96 5.00 9.44 10.17 9.97 1.77 6.12 10.23 10.05 11.56
  PLR 50.69* 50.27* 50.49* 50.56* 50.62* 50.41* 50.70* 50.34* 50.83* 50.82*
     CCR Range 1.40 1.27 1.69 1.69 0.82 1.11 1.39 1.51 0.98 1.09
  SVM (linear) 94.91* 89.31* 85.58* 79.55* 73.79* 94.23* 89.34* 85.30* 79.67* 74.34*
     CCR Range 0.76 3.29 4.66 3.72 4.51 2.24 2.18 2.68 2.77 7.30
  SVM (polynomial) 94.78* 89.45* 85.80* 78.67* 74.05* 94.28* 89.86* 84.69* 79.44* 74.33*
     CCR Range 2.22 2.87 4.94 3.46 4.60 2.24 15.39 3.24 4.66 4.86
  SVM (radial) 94.98* 89.74* 85.09* 79.36* 74.21* 94.62* 89.83* 84.47* 79.56* 74.62*
     CCR Range 1.43 4.00 5.29 2.62 2.66 1.69 2.39 2.28 4.99 6.10
  1. The best model performances are emboldened and a * flags models performances that are significantly different from HME3M (α = 0.05).