FlexSnap: Flexible Non-sequential Protein Structure Alignment

Table 1 Comparison of SARF, MultiProt, SCALI, and FlexSnap on the RIPC dataset.

SCOPID		SARF			MultiProt			SCALI			FlexSnap
Pro1	Pro2	size	rmsd	A	size	rmsd	A	size	rmsd	A	size	rmsd	A
d1nkl__	d1qdma1	67	2.21	92	67	1.82	68	62	1.94	69	73	2.39	100
d1nls__	d2bqpa_	212	1.50	83	213	1.03	100	195	1.62	83	210	2.81	83
d1qasa2	d1rsy__	109	2.27	65	107	1.24	93	98	1.92	82	111	1.73	100
d1b5ta_	d1k87a2	171	2.63	63	144	2.04	0	159	3.38	0	177	2.99	50
d1jwyb_	d1puja	115	2.43	83	108	1.81	92	110	4.60	83	116	2.61	92
d1jwyb_	d1u0la2_	97	2.02	100	103	1.86	91	91	4.52	90	96	2.82	100
d1nw5a_	d2adma	129	2.52	85	130	2.11	92	132	3.73	84	128	2.91	100
d1gsa 1_	d2hgsa1	73	2.59	20	74	1.56	40	69	3.23	40	73	2.81	20
d1qq5a_	d3chy__	88	2.39	67	82	1.97	67	52	2.08	66	93	2.94	67
d1kiaa_	d1nw5a_	146	2.48	83	153	1.85	75	138	3.99	75	141	2.69	75
Avg.	Agreement			74			72			67			79

Three values are reported for each alignment: its length, its rmsd, and A which is its agreement with the reference alignment in the RIPC dataset

ISSN: 1748-7188