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Table 1 Comparison of SARF, MultiProt, SCALI, and FlexSnap on the RIPC dataset.

From: FlexSnap: Flexible Non-sequential Protein Structure Alignment

SCOPID SARF MultiProt SCALI FlexSnap
Pro1 Pro2 size rmsd A size rmsd A size rmsd A size rmsd A
d1nkl__ d1qdma1 67 2.21 92 67 1.82 68 62 1.94 69 73 2.39 100
d1nls__ d2bqpa_ 212 1.50 83 213 1.03 100 195 1.62 83 210 2.81 83
d1qasa2 d1rsy__ 109 2.27 65 107 1.24 93 98 1.92 82 111 1.73 100
d1b5ta_ d1k87a2 171 2.63 63 144 2.04 0 159 3.38 0 177 2.99 50
d1jwyb_ d1puja 115 2.43 83 108 1.81 92 110 4.60 83 116 2.61 92
d1jwyb_ d1u0la2_ 97 2.02 100 103 1.86 91 91 4.52 90 96 2.82 100
d1nw5a_ d2adma 129 2.52 85 130 2.11 92 132 3.73 84 128 2.91 100
d1gsa 1_ d2hgsa1 73 2.59 20 74 1.56 40 69 3.23 40 73 2.81 20
d1qq5a_ d3chy__ 88 2.39 67 82 1.97 67 52 2.08 66 93 2.94 67
d1kiaa_ d1nw5a_ 146 2.48 83 153 1.85 75 138 3.99 75 141 2.69 75
Avg. Agreement    74    72    67    79
  1. Three values are reported for each alignment: its length, its rmsd, and A which is its agreement with the reference alignment in the RIPC dataset