FlexSnap: Flexible Non-sequential Protein Structure Alignment

Table 3 Comparison of several alignment methods on the DynDom dataset

DALI	Structal	MultiProt	FlexSnap^R	FlexSnap	FlexProt
aC/aR	aC/aR	aC/aR	aC/aR	aC/aR/aH	aC/aR/aH
97/2.31	87/1.27	87/1.15	85/1.60	96/1.46/0.45	88/2.14/0.45

Two values are reported for the alignments of each method: average coverage for the method (aC in %), and average rmsd (aR in Å). For FlexSnap and FlexProt, we also report the average number of hinges introduced (aH). FlexSnap^Ris FlexSnap in rigid mode with the number of maximum allowed hinges set to zero.

ISSN: 1748-7188