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Table 5 Comparison of FlexSnap and FlexProt on the DynDom pairs for which rigid alignment methods returned alignments with rmsd ≥ 4.0 Å

From: FlexSnap: Flexible Non-sequential Protein Structure Alignment

Rigid Alignment   FlexSnap FlexProt
Method #Pairs aC (%)/ aR (Å) aC (%)/ aR (Å)/ aH aC (%)/ aR (Å)/ aH
DALI 295 94/5.89 94/1.61/1.54 93/2.02/1.54
Structal 16 88/5.03 82/1.97/2.19 78/2.75/2.19
  1. Two values are reported for the alignments of each method: average coverage (aC in %), and average rmsd (aR in Å). For FlexSnap and FlexProt, we also report the average number of hinges introduced (aH).
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Algorithms for Molecular Biology

ISSN: 1748-7188