Skip to main content

Table 5 Comparison of FlexSnap and FlexProt on the DynDom pairs for which rigid alignment methods returned alignments with rmsd ≥ 4.0 Å

From: FlexSnap: Flexible Non-sequential Protein Structure Alignment

Rigid Alignment

 

FlexSnap

FlexProt

Method

#Pairs

aC (%)/ aR (Ã…)

aC (%)/ aR (Ã…)/ aH

aC (%)/ aR (Ã…)/ aH

DALI

295

94/5.89

94/1.61/1.54

93/2.02/1.54

Structal

16

88/5.03

82/1.97/2.19

78/2.75/2.19

  1. Two values are reported for the alignments of each method: average coverage (aC in %), and average rmsd (aR in Ã…). For FlexSnap and FlexProt, we also report the average number of hinges introduced (aH).
Back to article page

Algorithms for Molecular Biology

ISSN: 1748-7188