Table 5 P-values for several DNA patterns (known transcription factors are marked with a star) in the upstream region data set.
DNA pattern | n | L | homogeneous | heterogeneous |
|---|---|---|---|---|
CGCACCC* | 28 | 10 | 2.95 × 10-3 | 3.74 × 10-3 |
AAGAAAAA* | 427 | 11 | 1.31 × 10-99 | 1.29 × 10-99 |
AACAACAAC | 25 | 10 | 1.76 × 10-6 | 1.38 × 10-6 |
TCCGTGGA* | 22 | 11 | 1.12 × 10-6 | 1.55 × 10-6 |
GCGCGCGC | 18 | 11 | 6.52 × 10-10 | 1.65 × 10-9 |
RTAAAYAA* | 391 | 14 | 7.70 × 10-12 | 1.68 × 10-12 |
WWWTTTGCTCR* | 15 | 17 | 4.15 × 10-1 | 4.09 × 10-1 |
AAAAAAAAAAAAAAAAAAAAAAAA | 42 | 27 | 2.05 × 10-23 | 2.14 × 10-22 |
TAWWWWTAGM* | 212 | 36 | 3.08 × 10-9 | 3.04 × 10-9 |
YCCNYTNRRCCGN* | 11 | 40 | 3.10 × 10-2 | 3.05 × 10-2 |
GCGCNNNNNNGCGC | 1 | 106 | 8.97 × 10-1 | 8.84 × 10-1 |
CGGNNNNNNNNCGG* | 102 | 183 | 1.26 × 10-14 | 1.73 × 10-13 |
GCGCNNNNNNNNNNGCGC | 6 | 464 | 2.88 × 10-2 | 2.84 × 10-2 |