Differential co-expression framework to quantify goodness of biclusters and compare biclustering algorithms

Table 1 Biclustering algorithms

S. No.	Algorithm	Acronym	Reference
1	Cheng and Church's algorithm	CC	Cheng and Church [5]
2	Iterative Signature Algorithm	ISA	Ihmels et al [7]
3	Order Preserving Sub Matrix	OPSM	Ben-Dor et al [8]
4	Statistical Algorithmic Method for Bicluster Analysis	SAMBA	Tanay et al [12]

The four biclustering algorithms evaluated using our differential co-expression scoring framework. Their acronyms and references are also given. All four algorithms aim to find biclusters of genes with co-expression in a subset of conditions.

ISSN: 1748-7188