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Table 5 PGA and treecat results using multiple references

From: Phylogenetic comparative assembly

  PGA   treecat
Organism TP FP TPR PPV   TP FP TPR PPV
C. aurimucosum 14.5 (16) 66.5 (70) 0.13 (0.15) 0.18 (0.19)   17 66 0.16 0.20
C. kroppenstedtii 2.0 (2) 4.0 (4) 0.22 (0.22) 0.33 (0.33)   3 6 0.33 0.33
C. urealyticum 20.9 (25) 72.5 (76) 0.30 (0.36) 0.22 (0.25)   27 70 0.39 0.28
  1. Evaluation of applying PGA and treecat for ordering the sets of contigs with the help of the remaining genomes as references. PGA's results are averaged over 20 runs, the best run (highest TP with lowest FP) is given in parentheses. The overal best result is printed in bold face.