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Table 5 PGA and treecat results using multiple references

From: Phylogenetic comparative assembly

 

PGA

 

treecat

Organism

TP

FP

TPR

PPV

 

TP

FP

TPR

PPV

C. aurimucosum

14.5 (16)

66.5 (70)

0.13 (0.15)

0.18 (0.19)

 

17

66

0.16

0.20

C. kroppenstedtii

2.0 (2)

4.0 (4)

0.22 (0.22)

0.33 (0.33)

 

3

6

0.33

0.33

C. urealyticum

20.9 (25)

72.5 (76)

0.30 (0.36)

0.22 (0.25)

 

27

70

0.39

0.28

  1. Evaluation of applying PGA and treecat for ordering the sets of contigs with the help of the remaining genomes as references. PGA's results are averaged over 20 runs, the best run (highest TP with lowest FP) is given in parentheses. The overal best result is printed in bold face.
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Algorithms for Molecular Biology

ISSN: 1748-7188