From: Predicting direct protein interactions from affinity purification mass spectrometry data
 |  | (i) 1-cut vertices | (ii) Degree 2 vertices |  | ||||||
---|---|---|---|---|---|---|---|---|---|---|
Network | Total | real | pred. | FDR(%) | FNR(%) | real | pred. | FDR(%) | FNR(%) | Remaining |
Yu | 1090 | 552 | 552 | 0 | 0 | 195 | 207 | 7.7 | 2.05 | 331 |
DIP | 1406 | 656 | 656 | 0 | 0 | 309 | 326 | 5.82 | 0.64 | 424 |
PAM | 1000 | 457 | 457 | 0 | 0 | 351 | 363 | 3.58 | 0.28 | 180 |
DM | 1000 | 323 | 323 | 0 | 0 | 117 | 126 | 11.9 | 5.12 | 551 |