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Table 2 Performance of quasi-clique predictions

From: Predicting direct protein interactions from affinity purification mass spectrometry data

Network k= 7 k= 6 k= 5
  real pred. FD(%) FN(%) real pred. FD(%) FN(%) real pred. FD(%) FN(%)
Yu 42 54 22.22 0 66 104 36.53 0 146 308 55.19 5.48
DIP 0 42 100 0 86 112 26.79 4.65 184 266 35.34 6.52
PAM 0 31 100 0 0 45 100 0 0 96 100 0
DM 254 346 28.32 2.36 194 267 29.21 2.57 488 718 34.96 4.30
  1. Number of edges that belong to maximal cliques of size k. Real: actual number of edges that belong to maximal cliques of size k; pred: predicted number of maximal k-clique edges; FD(false discovery ratio): percentage of false-positives in the predicted set; FN(false negative ratio): percentage of false-negatives in the real set.