Skip to main content

Advertisement

Table 1 Overview of reconstruction methods and corresponding abbreviations

From: Accuracy of phylogeny reconstruction methods combining overlapping gene data sets

Abbreviation Description Reference  
Late-level combination:   
Consensus Majority-rule consensus [83]  
MRP_BR Matrix representation with parsimony and Baum/Ragan coding [18, 19]  
MRP_PU Matrix representation with parsimony and Purvis coding [43]  
MRP_I Matrix representation with irreversible parsimony and Baum/Ragan coding [46]  
MRF_BR Matrix representation with flipping and Baum/Ragan coding [47, 48]  
MRF_PU Matrix representation with flipping and Purvis coding -  
MRC Matrix representation with compatibility and Baum/Ragan coding [50, 51]  
MinCut Minimal cut [54]  
ModMinCut Modified minimal cut [55]  
MaxCut Maximal cut [57]  
QILI Quartet inference and local inconsistency [58]  
Medium-level combination:   
SuperQP Super quartet puzzling [4]  
AvCon Average consensus [14, 63]  
SDM Super distance matrix [15]  
Early-level combination:   
SA Superalignment e.g. [11]