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Table 3 Parameters varied in the simulations
From: Accuracy of phylogeny reconstruction methods combining overlapping gene data sets
| Parameter | Options | |
|---|---|---|
| Data set | S: | small |
| L: | large | |
| Taxa coverage | c: | complete |
| m: | missing | |
| True gene trees | E: | subtrees of species tree |
| R α : | rate of evolution assigned randomly from a Γ-distribution with parameter α (i.e., mean 1 and variance 1/α ) | |
| P: | substitution parameters and branch lengths gene-specific | |
| G: | trees gene-specific | |
| T θ : | trees random by coalescent process with parameter θ | |
| Reconstructed | e: | equal to true gene trees |
| gene trees | n: | normal sequence length and ML estimation |
