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Table 3 Parameters varied in the simulations

From: Accuracy of phylogeny reconstruction methods combining overlapping gene data sets

Parameter Options
Data set S: small
  L: large
Taxa coverage c: complete
  m: missing
True gene trees E: subtrees of species tree
  R α : rate of evolution assigned randomly from a Γ-distribution with parameter α (i.e., mean 1 and variance 1/α )
  P: substitution parameters and branch lengths gene-specific
  G: trees gene-specific
  T θ : trees random by coalescent process with parameter θ
Reconstructed e: equal to true gene trees
gene trees n: normal sequence length and ML estimation
  1. The setting in each simulation is abbreviated by one of the bold letters given in each of the four categories.
  2. Note that not all combinations were tested.