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Figure 2 | Algorithms for Molecular Biology

Figure 2

From: Fast prediction of RNA-RNA interaction

Figure 2

Recursion for partition function of subsequence [ i , j ] while [ k , l ] remains unpaired. Either the subsequence [i, j] is empty with recursion energy G = 0, or there exists one or more pairs with leftmost base pair kk 2. There are three possibilities for the position of base pair kk 2 and unpaired interval [k, l].

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