Table 2 Gene sequence parameters
From: A simulation study comparing supertree and combined analysis methods using SMIDGen
Data Set | Substitution Matrix | Base Frequencies. | Prop. Invar. Sites | Gamma | ||
|---|---|---|---|---|---|---|
Angiosperm | 1.54755 | 3.67531 | 1.86115 | A = 0.223269 | 0.2 | 0.5 |
0.93047 | 4.53303 | C = 0.206748 | ||||
1.0 | G = 0.256568 | |||||
T = 0.313414 | ||||||
Nematode | 1.24284 | 3.47484 | 0.48667 | A = 0.300414 | 0.273196 | 0.362026 |
1.07118 | 4.38510 | C = 0.191363 | ||||
1.0 | G = 0.196748 | |||||
T = 0.311475 | ||||||
rbcL | 1.09397 | 3.12811 | 0.35141 | A = 0.320128 | 0.101878 | 0.397524 |
1.55972 | 3.64704 | C = 0.176726 | ||||
1.0 | G = 0.167462 | |||||
T = 0.335683 | ||||||