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Table 3 Results for FC with H = 250 and p = 80% on the Benchmark 1 datasets

From: Speeding up the Consensus Clustering methodology for microarray data analysis

 

Precision

Timing

 

CNS Rat

Leukemia

NCI60

Lymph.

Yeast

PBM

CNS Rat

NCI60

Yeast

PBM

Hier-A

⑦

➌

➑

➌

➎

2

4.7 × 104

5.2 × 104

1.4 × 106

3.7 × 107

Hier-C

➏

④

➑

5

⑥

14 - ⑰

4.4 × 104

6.4 × 104

1.4 × 106

3.7 × 107

Hier-S

2

8

➑

②

10

2

5.3 × 104

5.2 × 104

1.4 × 106

3.0 × 107

K-means-R

➏

④

⑦

④

⑥

16

3.7 × 105

1.2 × 106

1.6 × 107

1.6 × 108

K-means-A

⑦

➌

➑

➌

⑥

12

3.1 × 105

9.3 × 105

1.8 × 107

2.1 × 108

K-means-C

➏

④

➑

④

⑥

12

2.5 × 105

6.5 × 105

1.4 × 107

2.0 × 108

K-means-S

➏

7

⑨

②

⑥

2

3.7 × 105

6.9 × 105

1.9 × 107

2.4 × 108

NMF-R

➏

④

⑦

④

-

-

1.1 × 108

6.3 × 107

-

-

NMF-A

⑦

➌

⑦

➌

-

-

3.0 × 107

1.2 × 107

-

-

NMF-C

➏

➌

➑

④

-

-

2.9 × 107

1.2 × 107

-

-

NMF-S

2

8

⑨

②

-

-

3.5 × 107

1.2 × 107

-

-

Gold solution

6

3

8

3

5

18

-

-

-

-

  1. A summary of the results for FC with H = 250 and p = 80%, on all algorithms and on the Benchmark 1
  2. datasets. The table legend is as in Table 1.
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Algorithms for Molecular Biology

ISSN: 1748-7188