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Figure 11 | Algorithms for Molecular Biology

Figure 11

From: Reducing the worst case running times of a family of RNA and CFG problems, using Valiant’s approach

Figure 11

The base case of the Outside VMT algorithm. (a) An illustration of the matrix A upon computing Ai, j. (b) An illustration of the pre-computed matrix β. All required values of the form αi', j'for computing αi, jhave already been computed in the sub-matrix A[0,i], [j,n], excluding the entry Ai, jitself. μi, jis obtained either by the multiplication (β[0,i),i)T A[0,i), j(the multiplication of the transposed striped dark gray vector in β with the striped dark gray vector in A), or by the multiplication Ai,(j, n] (βj,(j, n])T (the multiplication of the non-striped dark gray vector in A with the transposed non-striped dark gray vector in β).

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