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Figure 5 | Algorithms for Molecular Biology

Figure 5

From: Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences

Figure 5

Dependence of density of global alignment of random sequences versus their length. Pairs of random sequences from 10 to 600 a.a. were obtained according to the procedure described in Methods (subsection 2.1.2). The pairs were aligned using the global version of Smith-Waterman algorithm (substitution weight matrix PAM250, gap-open and gap-extension penalties GOP = 14, GEP = 2).

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Algorithms for Molecular Biology

ISSN: 1748-7188