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Table 2 Characteristics of modified sequences generated according to the sequential ("ancestor-descendant") and diverging ("descendant1-descendant2") schemes.

From: Comparative analysis of the quality of a global algorithm and a local algorithm for alignment of two sequences

PAM

"Ancestor-descendant"

"Descendant1-descendant2"

 

%Id

%Indel

%id

PAM (id)

%indel

PAM (indel)

30

74.9%

3.3%

57.9%

60.55

6.6%

68.56

60

57.9%

5.4%

37.6%

122.25

10.7%

202.14

120

37.6%

7.5%

20.1%

245.08

14.7%

>830

240

20.2%

8.9%

10.5%

473.87

17.3%

> 830

  1. Lines correspond to different values of PAM. The figures in columns are described in the text (subsection 2.2). All data are given as selected from 1000 sequence pairs. For control, the same data were obtained for a variety of 10,000 pairs; the results do not differ from those given in the table with an accuracy of tenths of a percent.
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Algorithms for Molecular Biology

ISSN: 1748-7188