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Table 1 Efficacy on dyad discovery

From: Efficient algorithms for the discovery of gapped factors

Efficacy of Discovery

 

rank

motif

GAL4

1/1/1

CGG RnnRCYnYnCnCCG

CAT8

15/3/3

CGG nnnnnnGGA

HAP1

7/1/6

CGG nnnTAnCGG(nnnTA)

LEU3

1/1/1

RCCG GnnCCG GY

LYS

1/3/3

WWWTCC RW (T|C)GG AWWW

PDR

1/2/2

TYTCCGCGG ARY

PPR1

1/1/1

WYCGG nnWWYKCCG AW

PUT3

1/1/1

YCGG nAnGCnAnnnCCG A

UGA3

3/1/1

AAA(A|G)CC GC (G|C)GG CGGSAWT

UME6

2/1/1

TAGCCGC CGA

  1. Discovery of dyad motifs by DyVerb for length 3 and distance up to 16. For each family, the second column displays the rank of the score values in the format z2 /z3 /significance of the corresponding motif. The latter appears in superposition to the actual site, highlighted in bold.
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Algorithms for Molecular Biology

ISSN: 1748-7188