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Table 1 Efficacy on dyad discovery

From: Efficient algorithms for the discovery of gapped factors

Efficacy of Discovery
  rank motif
GAL4 1/1/1 CGG RnnRCYnYnCnCCG
CAT8 15/3/3 CGG nnnnnnGGA
HAP1 7/1/6 CGG nnnTAnCGG(nnnTA)
LEU3 1/1/1 RCCG GnnCCG GY
LYS 1/3/3 WWWTCC RW (T|C)GG AWWW
PDR 1/2/2 TYTCCGCGG ARY
PPR1 1/1/1 WYCGG nnWWYKCCG AW
PUT3 1/1/1 YCGG nAnGCnAnnnCCG A
UGA3 3/1/1 AAA(A|G)CC GC (G|C)GG CGGSAWT
UME6 2/1/1 TAGCCGC CGA
  1. Discovery of dyad motifs by DyVerb for length 3 and distance up to 16. For each family, the second column displays the rank of the score values in the format z2 /z3 /significance of the corresponding motif. The latter appears in superposition to the actual site, highlighted in bold.