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Table 2 Comparison of W-patterns with randomly generated patterns

From: WildSpan: mining structured motifs from protein sequences

 

Number of predicted blocks

Number of blocks in average

Length of predicted blocks in average

Cluster propensity

W-patterns

1011

4.7

10

92.7%

Randomly generated patterns (average of 10 rounds)

1041

4.8

9.4

80.1%

  1. The clustering propensity of W-patterns generated by WildSpan was compared with randomly generated patterns. The experiments were tested on the 217 of 220 protein chains (PP220) in the protein-protein benchmark (no homologues can be found for the three cases: 1ml0_A, 1ml0_B, 1udi_I).
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Algorithms for Molecular Biology

ISSN: 1748-7188