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Table 1 r2 for isoform and gene expression levels inferred from 30 M reads of length 25 from reads simulated assuming uniform, respectively geometric expression of gene isoforms.

From: Estimation of alternative splicing isoform frequencies from RNA-Seq data

Isoform Expression Gene Expression
Algorithm Uniform Geometric Algorithm Uniform Geometric
Uniq 0.466 0.447 Uniq 0.579 0.586
Rescue 0.693 0.675 Rescue 0.724 0.724
UniqLN 0.856 0.838 GeneEM 0.636 0.637
Cufflinks 0.661 0.618 Cufflinks 0.778 0.757
RSEM 0.919 0.911 RSEM 0.939 0.934
IsoEM 0.971 0.970 IsoEM 0.990 0.982