Table 1 r2 for isoform and gene expression levels inferred from 30 M reads of length 25 from reads simulated assuming uniform, respectively geometric expression of gene isoforms.
From: Estimation of alternative splicing isoform frequencies from RNA-Seq data
Isoform Expression | Gene Expression | ||||
|---|---|---|---|---|---|
Algorithm | Uniform | Geometric | Algorithm | Uniform | Geometric |
Uniq | 0.466 | 0.447 | Uniq | 0.579 | 0.586 |
Rescue | 0.693 | 0.675 | Rescue | 0.724 | 0.724 |
UniqLN | 0.856 | 0.838 | GeneEM | 0.636 | 0.637 |
Cufflinks | 0.661 | 0.618 | Cufflinks | 0.778 | 0.757 |
RSEM | 0.919 | 0.911 | RSEM | 0.939 | 0.934 |
IsoEM | 0.971 | 0.970 | IsoEM | 0.990 | 0.982 |