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Algorithms for Molecular Biology
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Table 4
r
2
for isoform and gene expression levels inferred from 30 M single, respectively paired reads of length 25, simulated assuming geometric expression of gene isoforms with and without poly(A) tails.
From:
Estimation of alternative splicing isoform frequencies from RNA-Seq data
Reads
Poly(A)
Isoform Expression
Gene Expression
1 × 25
Yes
0.956
0.977
No
0.970
0.982
2 × 25
Yes
0.972
0.990
No
0.976
0.985
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