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Table 1 Numerical computation of USM encoding by generating forward (Equation 1) and backward (Equation 2) CGR successions.

From: Fractal MapReduce decomposition of sequence alignment

[ubase.bin,ubase.cgrForward,ubase.cgrBackward]

["a", [0, 0], [0.0906, 0.2994], [0.2135, 0.3036]]

["c", [0, 1], [0.0453, 0.6497], [0.4271, 0.6072]]

["g", [1, 0], [0.5226, 0.3248], [0.8543, 0.2145]]

["g", [1, 0], [0.7613, 0.1624], [0.7086, 0.4290]]

["c", [0, 1], [0.3806, 0.5812], [0.4173, 0.8580]]

["t", [1, 1], [0.6903, 0.7906], [0.8347, 0.7161]]

["g", [1, 0], [0.8451, 0.3953], [0.6695, 0.4322]]

["c", [0, 1], [0.4225, 0.6976], [0.3390, 0.8645]]

["t", [1, 1], [0.7112, 0.8488], [0.6781, 0.7291]]

["a", [0, 0], [0.3556, 0.4244], [0.3563, 0.4582]]

["t", [1, 1], [0.6778, 0.7122], [0.7127, 0.9164]]

["c", [0, 1], [0.3389, 0.8561], [0.4254, 0.8328]]

["t", [1, 1], [0.6694, 0.9280], [0.8508, 0.6656]]

["g", [1, 0], [0.8347, 0.4640], [0.7016, 0.3312]]

["c", [0, 1], [0.4173, 0.7320], [0.4033, 0.6624]]

["g", [1, 0], [0.7086, 0.3660], [0.8067, 0.3248]]

["t", [1, 1], [0.8543, 0.6830], [0.6134, 0.6497]]

["a", [0, 0], [0.4271, 0.3415], [0.2269, 0.2994]]

["c", [0, 1], [0.2135, 0.6707], [0.4539, 0.5988]]

["g", [1, 0], [0.6067, 0.3353], [0.9079, 0.1976]]

["g", [1, 0], [0.8033, 0.1676], [0.8158, 0.3953]]

["t", [1, 1], [0.9016, 0.5838], [0.6316, 0.7907]]

["c", [0, 1], [0.4508, 0.7919], [0.2633, 0.5814]]

["g", [1, 0], [0.7254, 0.3959], [0.5266, 0.1629]]

["a", [0, 0], [0.3627, 0.1979], [0.0533, 0.3259]]

["c", [0, 1], [0.1813, 0.5989], [0.1067, 0.6518]]

  1. See figure 1 for a graphical representation of the same succession. Note location of results in usm structure in the table's head.