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Table 1 Number of RMSD computations for the 4state_reduced decoy dataset with varying RMSD threshold.

From: Fast structure similarity searches among protein models: efficient clustering of protein fragments

Decoy set t = 2.4 Å t = 2.8 Å t = 3.2 Å t = 3.6 Å N N - 1 2
1ctf 87,219 103,780 122,095 140,094 198,765
1r69 130,510 150,415 171,407 189,659 228,150
1sn3 106,523 124,587 147,101 174,527 217,470
2cro 183,135 206,133 189,277 221,219 227,475
3icb 130,653 119,774 139,425 176,184 213,531
4pti 106,581 131,345 175,432 191,091 236,328
4rxn 95,306 117,515 143,481 190,997 228,826
Total 839,927 953,549 1,088,220 1,283,751 1,550,545