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Table 2 Number of RMSD computations for the semfold decoy dataset.

From: Fast structure similarity searches among protein models: efficient clustering of protein fragments

Decoy set This work N N - 1 2 ratio
1ctf 11,753,426 64,997,101 0.18
1e68 9,039,397 64,541,841 0.14
1eh2 7,332,361 65,453,961 0.11
1khm 22,047,014 222,193,740 0.10
1nkl 7,966,008 67,995,291 0.12
1pgb 13,465,834 63,636,121 0.21
Total 71,604,689 548,818,055 0.13
  1. For this table the RMSD threshold was 3.0 Å.