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Figure 12 | Algorithms for Molecular Biology

Figure 12

From: Getting DNA copy numbers without control samples

Figure 12

These figures show Fraction of B allele and DNA copy numbers using MHS (291 samples where 59 are control samples from HapMap, which are the ones used to calculate the reference) and NSA (reference using “normal” zones within tumoral samples (232 samples)) for chromosome 5 in sample GSM638955 from the Lung Cancer dataset hybridized to GenomeWideSNP 6.0. FracB plot shows that the sample has neutral copy number. MHS predictions show a wavy effect that is not present in the case of NSA.

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