Table 1 Number of detected peaks
| Â | Â | SISSRs | findPeaks | MACS | |||
|---|---|---|---|---|---|---|---|
Sample | Control | No. Peaks | % with motif | No. Peaks | % with motif | No. Peaks | % with motif |
IgG | Â | 88043 | 1 (1) | 6022 | 1 (2) | 2712 | 2 (2) |
Input | Â | 93067 | 3 (4) | 9719 | 5 (5) | 10015 | 3 (4) |
MAX | Â | 24517 | 5 (10) | 11878 | 7 (15) | 14133 | 6 (14) |
MAX | IgG | 3345 | 12 (30) | 4932 | 10 (26) | 18039 | 6 (12) |
MAX | Input | 4302 | 8 (24) | 4963 | 10 (26) | 14475 | 6 (14) |
MAX (IgG norm) | Â | 1066 | 26 (51) | 3533 | 16 (36) | 2191 | 13 (38) |
MAX (Input norm) | Â | 1082 | 26 (52) | 3493 | 16 (37) | 2178 | 13 (38) |
MAX (IgG/Input norm) | Â | 1076 | 26 (53) | 3489 | 16 (37) | 2169 | 13 (38) |
Input | Â | 13773 | 2 (2) | 47 | 2 (0) | 356 | 2 (1) |
FOXA1 | Â | 27978 | 27 (40) | 2572 | 55 (70) | 3598 | 44 (70) |
FOXA1 | Input | 890 | 58 (71) | 2626 | 57 (72) | 3571 | 42 (70) |
FOXA1 (Input norm) | Â | 256 | 73 (75) | 599 | 60 (74) | 580 | 45 (73) |