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Table 1 Number of detected peaks

From: A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements

   SISSRs findPeaks MACS
Sample Control No. Peaks % with motif No. Peaks % with motif No. Peaks % with motif
IgG   88043 1 (1) 6022 1 (2) 2712 2 (2)
Input   93067 3 (4) 9719 5 (5) 10015 3 (4)
MAX   24517 5 (10) 11878 7 (15) 14133 6 (14)
MAX IgG 3345 12 (30) 4932 10 (26) 18039 6 (12)
MAX Input 4302 8 (24) 4963 10 (26) 14475 6 (14)
MAX (IgG norm)   1066 26 (51) 3533 16 (36) 2191 13 (38)
MAX (Input norm)   1082 26 (52) 3493 16 (37) 2178 13 (38)
MAX (IgG/Input norm)   1076 26 (53) 3489 16 (37) 2169 13 (38)
Input   13773 2 (2) 47 2 (0) 356 2 (1)
FOXA1   27978 27 (40) 2572 55 (70) 3598 44 (70)
FOXA1 Input 890 58 (71) 2626 57 (72) 3571 42 (70)
FOXA1 (Input norm)   256 73 (75) 599 60 (74) 580 45 (73)
  1. For each data set, the number of peaks detected and the percentages of these that contained the expected binding motif are reported. Numbers within parentheses correspond to the fraction found in the top scoring 20% regions detected.