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Figure 3 | Algorithms for Molecular Biology

Figure 3

From: Direct vs 2-stage approaches to structured motif finding

Figure 3

Risotto’s and SISMA_Smile’s running times on synthetic datasets. Worst and average run times and standard deviations (in seconds) for SISMA_Smile and Risotto. Average runtime and standard deviations have been computed omitting best and worst runs. (a) (b) (c) Running times of all runs are considered. (a’) (b’) (c’) Only running times of runs in which both tools end computation are considered. Notice that the scale on Y-axes is not the same for all charts.

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