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Table 2 SISMA’s running times on biological datasets

From: Direct vs 2-stage approaches to structured motif finding

 

SISMA_Smile

SISMA_Speller

 

1st stage

2nd stage

1st stage

2nd stage

UASH-URS1_5

0.60 sec

23.28 sec

3.00 sec

0.24 sec

UASH-URS1_10

0.61 sec

358.43 sec

5.83 sec

26.70 sec

KAR4P

0.18 sec

663.04 sec

6.20 sec

114.64 sec

  1. Running times (in seconds) taken by stage 1 and 2 of SISMA_Smile and SISMA_Speller on biological datasets, when using an uniprocessor machine with 1GB of RAM. With one exception, stage 2 is always (much) slower than stage 1.
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Algorithms for Molecular Biology

ISSN: 1748-7188