From: Bootstrapping phylogenies inferred from rearrangement data
BGN, BGN* | Bootstrap by adding Gaussian Noise to the distance matrix. |
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BPC, BPC* | Bootstrap by Pairwise Comparisons: for each pair of sequences/genomes, sample |
columns/adjacencies with replacement to compute distance. | |
BC, BC* | Classical Bootstrap: sample columns with replacement to obtain replicate; sample |
adjacencies with replacement to compute distance matrix. | |
PJ, PJ* | Parsimony Jackknifing: choose each column with 1−1/e probablity to create replicate; |
sample adjacencies with replacement and discard duplicates to compute distance matrix. | |
dJK, dJK* | d%-JackKnife: Omit d% of columns at random to produce replicate; omit d% of adjacencies |
at random to compute distance matrix. | |
BP, BP* | Bootstrap by Perturbations: apply random mutations/rearrangements to get replicates. |
JG* | Jackknife Genes: Marker based jackknifing method of Shi et al for rearrangement data. |