Table 5 Comparison with CompostBin on the datasets described in[17]
From: Separating metagenomic short reads into genomes via clustering
| Species | Ratio | Phylogenetic | CompostBin’s | TOSS (Sanger) | TOSS (Illumina) |
|---|---|---|---|---|---|
| distance | error | error | error | ||
| Bacillus halodurans & Bacillus subtilis | 1:1 | Species | 6.48 | 1.05 | 1.38 |
| Gluconobacter oxydans& | 1:1 | Genus | 3.39 | 4.72 | 4.92 |
| Granulibacter bethesdensis | |||||
| Escherichia coli & Yersinia pestis | 1:1 | Genus | 10.00 | 3.11 | 2.58 |
| Methanocaldococcus jannaschii & | 1:1 | Family | 0.51 | 0.22 | 0.01 |
| Methanococcus maripaludis | |||||
| Pyrobaculum aerophilum & | 1:1 | Family | 0.28 | 1.05 | 0.01 |
| Thermofilum pendens | |||||
| Gluconobacter oxydans & | 1:1 | Order | 0.98 | 4.74 | 0.01 |
| Rhodospirillum rubrum | |||||
| Gluconobacter oxydans, | 1:1:8 | Family and Order | 7.7 | - | 6.45 |
| Granulibacter bethesdensis & | |||||
| Nitrobacter hamburgensis | |||||
| Escherichia coli, Pseudomonas putida & | 1:1:8 | Order and | 1.96 | - | 0.15 |
| Bacillus anthracis | Phylum | ||||
| Escherichia coli, Pseudomonas putida, | 1:1: | Species, Order, | 4.52 | - | 0.80 |
| Thermofilum pendens, | 1:1: | Family, | |||
| Pyrobaculum aerophilum, | 2:14 | Phylum, and | |||
| Bacillus anthracis & Bacillus subtilis | Kingdom |
