From: Separating metagenomic short reads into genomes via clustering
Species | Ratio | Phylogenetic | CompostBin’s | TOSS (Sanger) | TOSS (Illumina) |
---|---|---|---|---|---|
distance | error | error | error | ||
Bacillus halodurans & Bacillus subtilis | 1:1 | Species | 6.48 | 1.05 | 1.38 |
Gluconobacter oxydans& | 1:1 | Genus | 3.39 | 4.72 | 4.92 |
Granulibacter bethesdensis | |||||
Escherichia coli & Yersinia pestis | 1:1 | Genus | 10.00 | 3.11 | 2.58 |
Methanocaldococcus jannaschii & | 1:1 | Family | 0.51 | 0.22 | 0.01 |
Methanococcus maripaludis | |||||
Pyrobaculum aerophilum & | 1:1 | Family | 0.28 | 1.05 | 0.01 |
Thermofilum pendens | |||||
Gluconobacter oxydans & | 1:1 | Order | 0.98 | 4.74 | 0.01 |
Rhodospirillum rubrum | |||||
Gluconobacter oxydans, | 1:1:8 | Family and Order | 7.7 | - | 6.45 |
Granulibacter bethesdensis & | |||||
Nitrobacter hamburgensis | |||||
Escherichia coli, Pseudomonas putida & | 1:1:8 | Order and | 1.96 | - | 0.15 |
Bacillus anthracis | Phylum | ||||
Escherichia coli, Pseudomonas putida, | 1:1: | Species, Order, | 4.52 | - | 0.80 |
Thermofilum pendens, | 1:1: | Family, | |||
Pyrobaculum aerophilum, | 2:14 | Phylum, and | |||
Bacillus anthracis & Bacillus subtilis | Kingdom |