Table 1 Data sets from GEO database
N | GEO data set | Experiment summary/Title | N A | N B | N PC | N Ka |
|---|---|---|---|---|---|---|
1 | GSE8441 | Study of whether inadequate protein intake differentially affects skeletal muscle transcript levels and expression profiles in older adults[24] | 11 | 11 | 9 | 5 |
2 | GSE9499 | DNA methyltransferase 3B (DNMT3B) mutations in ICF syndrome[25] | 15 | 7 | 77 | 6 |
3 | GSE2638 and 2639 | GSE2639: HUVEC were left untreated or stimulated for 5h with 2 ng/ml TNF. Comparsion of the gene profiles revealed TNF-mediated gene expression changes in HUVEC[26]. Study TNF stimulated vs controls. | 7 | 7 | 13 | 8 |
4 | GSE2638 and 2639 | GSE2638: HMEC cultures were left untreated or stimulated for 5h with 2 ng/ml TNF. Comparison of the gene expression profiles revealed the TNF-mediated gene expression changes[26]. Study HMEC vs HUVEC | 3 | 4 | 16 | 9 |
5 | GSE3860 | Comparison of Hutchinson–Gilford Progeria Syndrome fibroblast cell lines to control fibroblast cell lines[27]. | 9 | 9 | 8 | 11 |
6 | GSE6344 | Gene expression in Stage 1,2 Normal and Tumor kidney cancer[28] | 10 | 10 | 19 | 15 |
7 | GSE7765 | Dioxin-induced gene expression changes in MCF-7 human breast cancer cells[29] | 3 | 3 | 13 | 18 |
8 | GSE6740_1 | Comparison of transcriptional profiles of CD4+ and CD8+ T cells from HIV-infected patients and uninfected control group[30]. Study of CD4+ T cells | 10 | 10 | 40 | 24 |
9 | GSE6740_2 | Comparison of transcriptional profiles of CD4+ and CD8+ T cells from HIV-infected patients and uninfected control group[30]. Study of CD8+ T cells | 10 | 10 | 62 | 25 |
10 | GSE6011 | Expression data from quadriceps muscle of young DMD patients and age matched controls[31] | 14 | 23 | 10 | 30 |
11 | GSE2531 | Total RNA from two commonly used choriocarcinoma cell lines, JEG3 and BeWo, are compared in this experiment to identify differentially expressed transcripts[32]. | 3 | 4 | 17 | 36 |
Total N P | 284 |