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Table 10 Running times for 1000-taxon model conditions

From: MRL and SuperFine+MRL: new supertree methods

  Scaffold Density
Method 20 50 75 100 Average
MRP(PAUP*) 76.14 (15.45) 55.53 (19.99) 43.87 (7.72) 54.56 (10.24) 56.03 (17.67)
MRP(TNT) 2.01 (0.64) 2.95 (1.31) 3.27 (0.59) 4.33 (0.75) 3.24 (1.19)
MRL(RAxML) 99.86 (28.15) 111.57 (48.06) 81.57 (28.87) 87.33 (11.59) 94.22 (33.76)
SuperFine+MRP(PAUP*) 7.14 (1.10) 6.16 (1.28) 8.13 (1.27) 5.56 (1.09) 6.73 (1.57)
SuperFine+MRP(TNT) 0.54 (0.11) 0.80 (0.09) 0.84 (0.16) 1.07 (0.17) 0.83 (0.23)
SuperFine+MRL(RAxML) 1.00 (0.14) 1.56 (0.94) 1.32 (0.71) 1.27 (0.23) 1.30 (0.64)
  1. We show the average running times, in minutes, to calculate the 1000-taxon supertrees estimated from 25 clade-based source trees and 1 scaffold tree. The standard deviation is shown in parenthesis. The lowest running time for each scaffold factor is shown in bold.