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Table 10 Running times for 1000-taxon model conditions

From: MRL and SuperFine+MRL: new supertree methods

 

Scaffold Density

Method

20

50

75

100

Average

MRP(PAUP*)

76.14 (15.45)

55.53 (19.99)

43.87 (7.72)

54.56 (10.24)

56.03 (17.67)

MRP(TNT)

2.01 (0.64)

2.95 (1.31)

3.27 (0.59)

4.33 (0.75)

3.24 (1.19)

MRL(RAxML)

99.86 (28.15)

111.57 (48.06)

81.57 (28.87)

87.33 (11.59)

94.22 (33.76)

SuperFine+MRP(PAUP*)

7.14 (1.10)

6.16 (1.28)

8.13 (1.27)

5.56 (1.09)

6.73 (1.57)

SuperFine+MRP(TNT)

0.54 (0.11)

0.80 (0.09)

0.84 (0.16)

1.07 (0.17)

0.83 (0.23)

SuperFine+MRL(RAxML)

1.00 (0.14)

1.56 (0.94)

1.32 (0.71)

1.27 (0.23)

1.30 (0.64)

  1. We show the average running times, in minutes, to calculate the 1000-taxon supertrees estimated from 25 clade-based source trees and 1 scaffold tree. The standard deviation is shown in parenthesis. The lowest running time for each scaffold factor is shown in bold.