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Table 11 Running times for 500-taxon model conditions

From: MRL and SuperFine+MRL: new supertree methods

 

Scaffold Density

Method

20

50

75

100

Average

MRP(PAUP*)

8.98 (1.66)

8.96 (1.43)

9.58 (2.28)

8.12 (1.63)

8.91 (1.86)

MRP(TNT)

0.32 (0.15)

0.42 (0.12)

0.45 (0.11)

0.53 (0.10)

0.43 (0.14)

MRL(RAxML)

18.99 (6.88)

19.24 (4.72)

20.35 (5.96)

18.35 (4.84)

19.24 (5.65)

SuperFine+MRP(PAUP*)

4.75 (1.46)

4.30 (1.23)

3.24 (1.89)

5.87 (1.53)

4.53 (1.82)

SuperFine+MRP(TNT)

0.22 (0.09)

0.27 (0.08)

0.31 (0.07)

0.41 (0.23)

0.30 (0.15)

SuperFine+MRL(RAxML)

0.40 (0.13)

0.49 (0.12)

0.58 (0.13)

0.55 (0.31)

0.51 (0.20)

  1. We give the average running times, in minutes, to calculate the 500-taxon supertrees estimated from 15 clade-based source trees and 1 scaffold tree. The standard deviation is shown in parenthesis. The lowest running time for each scaffold factor is shown in bold.