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Figure 3 | Algorithms for Molecular Biology

Figure 3

From: Gene tree correction for reconciliation and species tree inference

Figure 3

Solving the MINIMUM LEAF REMOVAL RECONCILIATION problem for a tree satisfying CONSTRAINT C; (a) A gene tree T on G ={1,2,3,4,5,6,7,8}; (b) A species tree S for G . Internal vertices of S are identified with different characters. Labels of internal vertices of T are attributed according to the LCA mapping between T and S. T contains 5 duplication vertices with respect to S: two AD vertices (surrounded by a circle) and three NAD vertices (surrounded by a square); (c) The tree TIobtained by replacing the two subtrees of T rooted at each of the two AD vertices by their weighted induced trees. Leaves’ weights are given in brackets; (d) The weighted agreement subtree WMAXof TIand S of maximum value. v(WMAX)=7; (e) The subtree TMAXof T induced by WMAX. TMAXis an MD-tree consistent with S.

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