Skip to main content

Table 8 Main statistics for the underlying approach averaged over all experiments

From: Alignment-free phylogeny of whole genomes using underlying subwords

Counting

Influenza A

Arch. & Bact.

Plasmodium

Min genome size

12,976 b

650 kbp

18,524 kbp

Max genome size

13,611 b

8,350 kbp

23,730 kbp

Average genome size

13,230 b

2,700 kbp

21,380 kbp

Irredundants| I s 1 , s 2 |

3,722

3,167 k

16,354 k

Underlying subwords

60

112 k

706 k

| U s 1 , s 2 |

   

Min |w| in U s 1 , s 2

6

10

12

Max |w| in U s 1 , s 2

1,615

25

266

Average |w| in U s 1 , s 2

264

14

20

Untied inversions

28%

31%

33%

Untied complements

22%

20%

19%