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Table 11 Effect of model selection on reconstruction accuracy for sequences of length 5000 with very high evolutionary rates

From: Invariant based quartet puzzling

  Jukes Cantor BSI Invariants Kimura 2 Parameter Invariants
Sequences generated under Jukes Cantor model assumptions for tree AA 24 12
Sequences generated under Kimura 2 Parameter model assumptions for tree AA 56 69
Sequences generated under Jukes Cantor model assumptions for tree CC 99 84
Sequences generated under Kimura 2 Parameter model assumptions for tree CC 63 88
  1. Percentage of reconstructed trees for data data sets generated by Jukes Cantor versus Kimura 2 parameter model assumptions.