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Table 3 Length 300 simulation accuracy percentages

From: Invariant based quartet puzzling

  Molecular Clock No Molecular Clock
  AA BB AB AVG CC DD CD AVG
M=0.1 BSI-JC 5 9 8 7 11 10 12 11
M=0.1 K2P 5 8 6 6 10 10 11 11
M=0.1 ML 1 3 2 2 3 3 4 3
M=0.3 BSI-JC 14 27 17 19 33 34 35 34
M=0.3 K2P 5 22 11 13 27 25 25 26
M=0.3 ML 4 14 7 9 18 24 21 21
M=1.0 BSI-JC 3 11 3 6 20 25 23 23
M=1.0 K2P 1 7 2 3 5 7 6 6
M=1.0 ML 0 3 1 2 17 26 22 22
M=2.0 BSI-JC 0 0 0 0 0 0 0 0
M=2.0 K2P 0 0 0 0 0 0 0 0
M=2.0 ML 0 0 0 0 1 3 1 2
  1. Comparison of the percentage of reconstructed trees that match the correct tree using Biologically Symmetric Invariants (BSI) and Kimura 2 parameter invariants (K2P) versus Maximum Likelihood (ML) for sequences of length 300.