Algorithms for Molecular Biology

Table 3 Length 300 simulation accuracy percentages

From: Invariant based quartet puzzling

	Molecular Clock				No Molecular Clock
	AA	BB	AB	AVG	CC	DD	CD	AVG
M=0.1 BSI-JC	5	9	8	7	11	10	12	11
M=0.1 K2P	5	8	6	6	10	10	11	11
M=0.1 ML	1	3	2	2	3	3	4	3
M=0.3 BSI-JC	14	27	17	19	33	34	35	34
M=0.3 K2P	5	22	11	13	27	25	25	26
M=0.3 ML	4	14	7	9	18	24	21	21
M=1.0 BSI-JC	3	11	3	6	20	25	23	23
M=1.0 K2P	1	7	2	3	5	7	6	6
M=1.0 ML	0	3	1	2	17	26	22	22
M=2.0 BSI-JC	0	0	0	0	0	0	0	0
M=2.0 K2P	0	0	0	0	0	0	0	0
M=2.0 ML	0	0	0	0	1	3	1	2

Comparison of the percentage of reconstructed trees that match the correct tree using Biologically Symmetric Invariants (BSI) and Kimura 2 parameter invariants (K2P) versus Maximum Likelihood (ML) for sequences of length 300.

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ISSN: 1748-7188

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