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Table 4 Length 300 simulation Robinson-Foulds distances

From: Invariant based quartet puzzling

  Molecular Clock No Molecular Clock
  AA BB AB AVG CC DD CD AVG
M=0.1 BSI-JC 4.9 4.8 4.9 4.9 4.4 4.5 4.3 4.4
M=0.1 K2P 5.1 4.9 5.0 5.0 4.7 4.7 4.4 4.6
M=0.1 ML 4.3 3.8 4.1 4.1 3.6 3.7 3.6 3.6
M=0.3 BSI-JC 3.2 2.6 3.3 3.0 2.1 2.1 2.1 2.1
M=0.3 K2P 4.4 3.3 4.0 3.9 2.7 2.6 2.7 2.7
M=0.3 ML 3.1 2.2 2.9 2.7 1.8 1.7 1.8 1.8
M=1.0 BSI-JC 4.8 4.8 5.3 5.0 3.1 2.8 2.9 2.9
M=1.0 K2P 5.9 5.7 6.1 5.9 5.9 5.5 5.7 5.7
M=1.0 ML 4.3 3.6 4.1 4.0 1.9 1.7 1.8 1.8
M=2.0 BSI-JC 9.1 11.6 10.3 10.3 11 11.4 11.2 11.2
M=2.0 K2P 8.8 11.7 9.9 10.1 15.1 15.0 14.9 15.0
M=2.0 ML 6.6 6.5 6.6 6.6 4.3 4.1 4.2 4.2
  1. Comparison of the average Robinson-Foulds distance between the reconstructed tree and the correct tree for sequences of length 300.